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325 Views 3 Replies Latest reply: Oct 29, 2018 12:04 PM by jvgeiger RSS
Currently Being Moderated

Oct 16, 2018 8:45 PM

LIS compilation error

It's a little weird error, as the compiler keep complaining that it couldn't find my netcdf library. I'm trying to install LIS on NASA's Pleiades supercomputer. Any advice is appreciated.

 

Here is my configure file:

 

FC          = ifort
FC77        = ifort
LD          = ifort
CC          = icc
AR          = ar
MOD_ESMF    = /nobackupp8/ywang24/esmf/mod/modO/Linux.intel.64.mpiuni.default
LIB_ESMF    = /nobackupp8/ywang24/esmf/lib/libO/Linux.intel.64.mpiuni.default
INC_JASPER  = /nasa/pkgsrc/sles12/2016Q4/include/
LIB_JASPER  = /nasa/pkgsrc/sles12/2016Q4/lib/
INC_GRIBAPI = /home6/ywang24/local/grib_api_1.13.1/include/
LIB_GRIBAPI = /home6/ywang24/local/grib_api_1.13.1/lib/
INC_NETCDF  = /nasa/netcdf/4.4.1.1_mpt/include/
LIB_NETCDF  = /nasa/netcdf/4.4.1.1_mpt/lib/
INC_HDF4    = /nasa/hdf4/4.2.12/include/
LIB_HDF4    = /nasa/hdf4/4.2.12/lib/
INC_HDF5    = /nasa/hdf5/1.8.18_mpt/include/
LIB_HDF5    = /nasa/hdf5/1.8.18_mpt/lib/
INC_HDFEOS  =
LIB_HDFEOS  =
LIB_MINPACK =
INC_CRTM    =
LIB_CRTM    =

INC_PROF_UTIL   =

LIB_PROF_UTIL   =

INC_CMEM    =
LIB_CMEM    =
LIB_LAPACK  =
CFLAGS      = -c   -DIFC -DLINUX
FFLAGS77    = -c  -O2 -nomixed_str_len_arg -names lowercase -convert big_endian -assume byterecl -DSPMD -DHIDE_SHR_MSG -DNO_SHR_VMATH -DIFC -DLINUX -I$(MOD_ESMF) -DUSE_INCLUDE_MPI -I$(INC_GRIBAPI) -I$(INC_NETCDF) -I$(INC_HDF4) -I$(INC_HDF5)
FFLAGS      = -c  -O2 -u -traceback -fpe0 -nomixed_str_len_arg -names lowercase -convert big_endian -assume byterecl -DSPMD -DHIDE_SHR_MSG -DNO_SHR_VMATH -DIFC -DLINUX -I$(MOD_ESMF) -DUSE_INCLUDE_MPI -I$(INC_GRIBAPI) -I$(INC_NETCDF) -I$(INC_HDF4) -I$(INC_HDF5)
LDFLAGS     = /lib64/libz.so.1 -L$(LIB_ESMF) -lesmf -lstdc++ -limf -lrt -lmpi -L$(LIB_GRIBAPI) -lgrib_api_f90 -lgrib_api -L$(LIB_JASPER) -ljasper -L$(LIB_NETCDF) -lnetcdff -lnetcdf -L$(LIB_HDF4) -lmfhdf -ldf -ljpeg -lz -L$(LIB_HDF5) -lhdf5_fortran -lhdf5_hl -lhdf5
  • Currently Being Moderated
    Oct 19, 2018 1:58 PM (in response to ywang)
    Re: LIS compilation error

    Hello,

     

    I do not see an issue with your configure.lis file.  Would please post the error messages that you get from make?

     

    Thanks,

    Jim

      • Currently Being Moderated
        Oct 29, 2018 12:04 PM (in response to ywang)
        Re: LIS compilation error

        Hello,

         

        I have a silly follow up question.  The NetCDF team now packages the NetCDF library in parts: the main Netcdf library and extra language bindings.  Do you have the netcdf-fortran library installed?  Do you see libnetcdff.so in /nasa/netcdf/4.4.1.1_mpt/lib/ (note the double f)?

         

        Thanks,

        Jim

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